Index

3

Gaussian Basis

6

Gaussian Basis

A

AddCounterIons	Function
AddItemToPDBComponentLibrary	Function
Ahlrichs Coulomb Fitting	Gaussian Basis
AM1	MNDO Hamiltonian
AmberCrdFileReader	Class
AmberCrdFileReader	Module
AmberCrdFile_ToCoordinates3	Function
AmberCrdFile_ToSymmetryParameters	Function
AmberTopologyFileReader	Class
AmberTopologyFileReader	Module
AmberTopologyFile_ToSystem	Function
AmberTrajectoryFileReader	Class
AmberTrajectoryFileReader	Module
AmberTrajectoryFileWriter	Class
AmberTrajectoryFileWriter	Module
AmberTrajectory_FromSystemGeometryTrajectory	Function
AmberTrajectory_ToSystemGeometryTrajectory	Function
Angle	Class
Angle	Module
AngleContainer	Class
ArcLengthStructureSummary	Function
ArgumentError	Class
AromaticDoubleBond	Class
AromaticSingleBond	Class
Atom	Class
Atom	Module
AtomContainer	Class
AtomPattern	Class
AtomPattern	Module
AtomPatternContainer	Class
AveragePositions	Function

B

BakerOptimizer	Class	BondPattern	Class
BakerOptimizer	Module	BondPattern	Module
BakerSaddleOptimize_SystemGeometry	Function	BondPatternContainer	Class
BlockStorage	Class	BooleanArray	Class
BlockStorage	Module	BooleanArrayType	Class
Bond	Class	BoundaryAtom	Class
Bond	Module	BuildCubicSolventBox	Function
BondContainer	Class	BuildHydrogenCoordinates3FromConnectivity	Function
BondDefinition	Class	BuildSolventBox	Function

C

CHARMMCRDFileReader	Class	CoordinateBuilding	Module
CHARMMCRDFileReader	Module	CoordinateFluctuations	Function
CHARMMCRDFile_ToCoordinates3	Function	Coordinates3	Class
CHARMMCRDFile_ToSequence	Function	Coordinates3	Module
CHARMMCRDFile_ToSystem	Function	Coordinates3_FromGrid	Function
CHARMMParameterContainer	Class	CoreObjects	Module
CHARMMParameterFileReader	Class	Correlation	Module
CHARMMParameterFileReader	Module	Correlation_AutoCorrelation	Function
CHARMMParameterFiles_ToParameters	Function	Correlation_CrossCorrelation	Function
CHARMMPSFFileReader	Class	Correlation_DotProductAutoCorrelation	Function
CHARMMPSFFileReader	Module	Correlation_DotProductCrossCorrelation	Function
CHARMMPSFFile_ToSystem	Function	CovarianceMatrix	Function
CHIRALITYCLASSCONNECTIONS	Variable	CPUTime	Class
CHIRALITYMAXIMUMNUMBERS	Variable	CreateElementSequence	Function
CIPLabelFinder	Function	CreateHomogeneousIsolateSequence	Function
CIPLabelFinder	Module	CrossPairList	Class
Clone	Module	CrossPairListIterator	Class
CMAPDihedralContainer	Class	CrossPairList_FromDoubleCoordinates3	Function
CMAPDihedralContainer	Module	CrossPairList_FromIntegerPairs	Function
CMAPDihedralContainer_Pickle	Function	CrossPairList_FromSingleCoordinates3	Function
Configuration	Class	CrossPairList_Pickle	Function
Configuration	Module	CrystalAnalyzeTransformations	Function
ConjugateGradientMinimizer	Class	CrystalCenterCoordinates	Function
ConjugateGradientMinimizer	Module	CrystalClass	Class
ConjugateGradientMinimize_SystemGeometry	Function	CrystalClass	Module
Connectivity	Class	CrystalClassCubic	Class
Connectivity	Module	CrystalClassHexagonal	Class
ConnectivityPattern	Class	CrystalClassMonoclinic	Class
ConnectivityPattern	Module	CrystalClassOrthorhombic	Class
CONSTANT_ATOMIC_MASS	Variable	CrystalClassRhombohedral	Class
CONSTANT_AVOGADRO_NUMBER	Variable	CrystalClassTetragonal	Class
CONSTANT_BOLTZMANN	Variable	CrystalClassTriclinic	Class
CONSTANT_ELECTRON_CHARGE	Variable	CrystalExpandToP1	Function
CONSTANT_MOLAR_GAS	Variable	CrystalGetImageBondPairs	Function
CONSTANT_MOLAR_IDEAL_GAS_VOLUME	Variable	CrystalUtilities	Module
CONSTANT_PLANCK	Variable	CubicSpline	Class
CONSTANT_SPEED_OF_LIGHT	Variable	CubicSpline	Module
CONSTANT_VACUUM_PERMITTIVITY	Variable

D

DeMon Coulomb Fitting	Gaussian Basis	DIISSCFConverger	Module
DetermineSolvationParameters	Function	DIISSCFConvergerState	Class
DetermineUniqueEntityLabel	Function	DIISSCFConvergerState	Module
Dihedral	Class	DIISSCFConverger_Pickle	Function
Dihedral	Module	DistanceConstraint	Class
DihedralContainer	Class	DistanceGeometryObjectiveFunction	Class
DIISSCFConverger	Class	DoubleBond	Class

E

ElectronicState	Class	EMSLG94FileReader	Class
ElectronicState	Module	EMSLG94File_ToGaussianBases	Function
Element	Class	EnergyModel	Class
Element	Module	EnergyModel	Module
ElementContainer	Class	EnergyTerms	Class
ELEMENTSAROMATIC	Variable	EnergyTerms	Module
ELEMENTSORGANIC	Variable	ESPChargeFitting	Function
EMSLFileReader	Module	ESPChargeFitting	Module

F

fDynamoCRDFileReader	Class	FourierDihedralContainer	Class
fDynamoCRDFileReader	Module	FourierDihedralContainer	Module
fDynamoCRDFile_ToCoordinates3	Function	FourierDihedralContainer_Pickle	Function
fDynamoCRDFile_ToSequence	Function	FourierDihedralParameter	Class
fDynamoCRDFile_ToSystem	Function	FourierDihedralParameterContainer	Class
FindRings	Function	FourierImproperParameter	Class
FindRingSets	Function	FourierImproperParameterContainer	Class
FloatArray	Class	FourierTerm	Class
FloatArrayType	Class	FreeEnergyUtilities	Module

G

GaussianBasis	Class	GaussianCubeFile_ToCoordinates3	Function
GaussianBasis	Module	GaussianCubeFile_ToSystem	Function
GaussianBasis_Pickle	Function	GenerateVanDerWaalsSurface	Function
GaussianCubeFileReader	Class	GeometryOptimization	Module
GaussianCubeFileReader	Module	GetInteractionTerms	Function
GaussianCubeFileWriter	Class	GetRESPConstraints	Function
GaussianCubeFileWriter	Module	Gradients3	Class
GaussianCubeFile_FromSystemDensity	Function	Gradients3	Module
GaussianCubeFile_FromSystemOrbitals	Function	GrowingStringInitialPath	Function
GaussianCubeFile_FromSystemPotential	Function

H

HardConstraintContainer	Class	HarmonicBondContainer	Module
HardConstraintContainer	Module	HarmonicBondContainer_Pickle	Function
HardSphereIonMobilities	Function	HarmonicBondParameter	Class
HardSphereIonMobilities	Module	HarmonicBondParameterContainer	Class
HarmonicAngleContainer	Class	HarmonicImproperContainer	Class
HarmonicAngleContainer	Module	HarmonicImproperContainer	Module
HarmonicAngleContainer_Pickle	Function	HarmonicImproperContainer_Pickle	Function
HarmonicAngleParameter	Class	Heading	Class
HarmonicAngleParameterContainer	Class	Histogram	Module
HarmonicBondContainer	Class

I

IdentifyPossibleBonds	Function	Integer1DArray_Pickle	Function
IdentifyUndefinedCoordinates3	Function	Integer2DArray	Class
Identity	Class	Integer2DArray	Module
ImageList	Class	Integer2DArray_Pickle	Function
ImageList	Module	IntegerArray	Class
ImproperRotation	Class	IntegerArrayType	Class
Integer1DArray	Class	Inversion	Class
Integer1DArray	Module

J

JaguarBondOrders	Function	JaguarInputFile_ToSystem	Function
JaguarInputFileReader	Class	JaguarOrbitalData	Class
JaguarInputFileReader	Module	JaguarOutputFileReader	Class
JaguarInputFileWriter	Class	JaguarOutputFileReader	Module
JaguarInputFileWriter	Module	JaguarOutputFile_ToCoordinates3	Function
JaguarInputFile_FromSystem	Function	JaguarOutputFile_ToSystem	Function
JaguarInputFile_ToCoordinates3	Function	JaguarScripts	Module

L

LangevinDynamics_SystemGeometry	Function	LJParameterContainer	Class
LangevinVelocityVerletIntegrator	Class	LJParameterContainer	Module
LangevinVelocityVerletIntegrator	Module	LJParameterContainer_FromEpsilonSigma	Function
LBFGSMinimizer	Class	LJParameterContainer_FromTableCoefficients	Function
LBFGSMinimizer	Module	LJParameterContainer_Pickle	Function
LeapFrogDynamics_SystemGeometry	Function	logFile	Variable
LeapFrogIntegrator	Class	LogFileActive	Function
LeapFrogIntegrator	Module	LogFileWriter	Class
LebedevLaikovGrid	Module	LogFileWriter	Module
LebedevLaikovGrid_GetGridPoints	Function

M

MakeDefaultPDBComponentLibrary	Function
MakeOPLSXPKFile	Function
Matrix	Class
Matrix	Module
Matrix33	Class
Matrix33	Module
Matrix33_Pickle	Function
Matrix33_RandomRotation	Function
Matrix33_RotationAboutAxis	Function
MatrixN3	Class
MatrixN3	Module
MatrixN3_Pickle	Function
Matrix_Pickle	Function
Merge	Module
MergeByAtom	Function
MMAtomContainer	Class
MMAtomContainer	Module
MMAtomContainer_Pickle	Function
mmCIFFileReader	Class
mmCIFFileReader	Module
mmCIFFileTable	Class
mmCIFFileWriter	Class
mmCIFFileWriter	Module
mmCIFFile_FromSystem	Function
mmCIFFile_ToSystem	Function
mmCIFModel	Class
mmCIFModel	Module
mmCIFModelAsymmetricUnitDefinition	Class
mmCIFModelAtom	Class
mmCIFModelAtomData	Class
mmCIFModelComponent	Class
mmCIFModelConnection	Class
mmCIFModelEntity	Class
mmCIFModelEntityDefinition	Class
mmCIFModelItem	Class
mmCIFModelNonPolymerEntity	Class
mmCIFModelPolymerEntity	Class
mmCIFModelWaterEntity	Class
MMModel	Class
MMModel	Module
MMModelAMBER	Class
MMModelCHARMM	Class
MMModelError	Class
MMModelOPLS	Class
MMModelUtilities	Module
MMPattern	Class
MMPatternContainer	Class
MMTerm	Class
MMTerm	Module
MMTermContainer	Class
MMTermContainer	Module
MNDO	MNDO Hamiltonian
MNDO STO-nG	Gaussian Basis
MNDOParameters	Class
MNDOParameters	Module
MNDOParameters_Pickle	Function
MOL2FileReader	Class
MOL2FileReader	Module
MOL2FileWriter	Class
MOL2FileWriter	Module
MOL2File_FromSystem	Function
MOL2File_ToAtomNames	Function
MOL2File_ToCharges	Function
MOL2File_ToCoordinates3	Function
MOL2File_ToSystem	Function
MolecularDynamics	Module
MOLFileReader	Class
MOLFileReader	Module
MOLFileWriter	Class
MOLFileWriter	Module
MOLFile_FromSystem	Function
MOLFile_ToCoordinates3	Function
MOLFile_ToSystem	Function
MonteCarloSystemGeometry	Module
MonteCarlo_IsolateInteractionEnergy	Function
MonteCarlo_ScaleIsolateInteractionParameters	Function
MonteCarlo_SystemGeometry	Function
MopacInputFileReader	Class
MopacInputFileReader	Module
MopacInputFile_ToCoordinates3	Function
MopacInputFile_ToSystem	Function
MultiCubicSpline	Class
MultiCubicSpline	Module
MultiDimensionalMinimizer	Class
MultiDimensionalMinimizer	Module
MultiLayerSubsystem	Class
MultiLayerSystemGeometryObjectiveFunction	Class
MultiLayerSystemGeometryObjectiveFunction	Module

N

NBModel	Class
NBModel	Module
NBModelABFS	Class
NBModelABFS	Module
NBModelABFSState	Class
NBModelABFSState	Module
NBModelABFS_Pickle	Function
NBModelFull	Class
NBModelFull	Module
NBModelFullState	Class
NBModelFullState	Module
NBModelFull_Pickle	Function
NBModelGABFS	Class
NBModelGABFS	Module
NBModelGABFSState	Class
NBModelGABFSState	Module
NBModelGABFS_Pickle	Function
NBModelMonteCarlo	Class
NBModelMonteCarlo	Module
NBModelMonteCarloState	Class
NBModelMonteCarloState	Module
NBModelMonteCarlo_Pickle	Function
NBModelORCA	Class
NBModelORCA	Module
NBModelORCAState	Class
NBModelORCAState	Module
NBModelORCA_Pickle	Function
NEBObjectiveFunction	Class
NEBSplineOptimizer	Class
NormalModes	Module
NormalModesPrint_SystemGeometry	Function
NormalModeState	Class
NormalModesTrajectory_SystemGeometry	Function
NormalModes_SystemGeometry	Function
NudgedElasticBand	Module
NudgedElasticBandSplineOptimize_SystemGeometry	Function
Null	Class
NullBond	Class

O

ObjectArray	Class	OPLSScripts	Module
ObjectiveFunction	Class	ORCAError	Class
ObjectiveFunction	Module	ORCAOutputFileReader	Class
ObjectiveFunctionIterator	Class	ORCAOutputFileReader	Module
ObjectiveFunctionIterator	Module	ORCAOutputFile_ToCoordinates3	Function
OPLS	Parameter Directory	ORCAOutputFile_ToSystem	Function
OPLSAtomType	Class	OrthorhombicBoxConstraint	Class
OPLSAtomTypeContainer	Class

P

PairList	Module
Paragraph	Class
PathSummary	Function
pBabel	Package
PBABEL_VERSION	Variable
pCore	Package
PCOREXML_FILEEXTENSION	Variable
PCOREXML_HEADER	Variable
PCOREXML_MARKUP	Variable
PCOREXML_VERSION	Variable
PCORE_VERSION	Variable
PDB Components	PDB Components
PDB Links	PDB Component Links
PDB Variants	PDB Component Variants
PDBComponent	Class
PDBComponent	Module
PDBComponentAtom	Class
PDBComponentBond	Class
PDBComponentCIFFileReader	Class
PDBComponentCIFFileReader	Module
PDBComponentCIFFile_ToComponents	Function
PDBComponentLink	Class
PDBComponentLink_FromXPKFileToDictionary	Function
PDBComponentLink_ToXPKFile	Function
PDBComponentScripts	Module
PDBComponentVariant	Class
PDBComponentVariant_FromXPKFileToDictionary	Function
PDBComponentVariant_ToXPKFile	Function
PDBComponent_FromXPKFileToDictionary	Function
PDBComponent_ToXPKFile	Function
PDBFileReader	Class
PDBFileReader	Module
PDBFileWriter	Class
PDBFileWriter	Module
PDBFile_FromSystem	Function
PDBFile_ToPDBModel	Function
PDBFile_ToSystem	Function
PDBModel	Class
PDBModel	Module
PDBModelAtom	Class
PDBModelAtomData	Class
PDBModelBond	Class
PDBModelChain	Class
PDBModelFileReader	Class
PDBModelFileReader	Module
PDBModelFileWriter	Class
PDBModelFileWriter	Module
PDBModelFile_FromPDBModel	Function
PDBModelFile_ToPDBModel	Function
PDBModelLink	Class
PDBModelResidue	Class
PDBModelResidueContainer	Class
PDBModelSegment	Class
PDBScripts	Module
PDDG/MNDO	MNDO Hamiltonian
PDDG/PM3	MNDO Hamiltonian
PeriodicTable	Variable
Pickle	Function
Pickle	Module
PM3	MNDO Hamiltonian
PM6	MNDO Hamiltonian
pMolecule	Package
pMoleculeScripts	Package
PMOLECULESCRIPTS_VERSION	Variable
PMOLECULE_VERSION	Variable
pObjectProperty	Class
pReadOnlyProperty	Class
PrintComponentFrequency	Function
PrintObject	Class
PrintObjects	Module
PrintPriority	Class
PrintPriority_Debug	Variable
PrintPriority_High	Variable
PrintPriority_Low	Variable
PrintPriority_Medium	Variable
PrintPriority_None	Variable
PrintPriority_Veryhigh	Variable
PrintPriority_Verylow	Variable
ProcessMaxima	Function
ProcessPDBComponentDictionary	Function
ProperRotation	Class
Prune	Module
PruneByAtom	Function

Q

QCAtomContainer	Class	QCModelMNDOState	Class
QCAtomContainer	Module	QCModelMNDOState	Module
QCAtomContainer_FromAtomContainer	Function	QCModelMNDO_Pickle	Function
QCAtomContainer_Pickle	Function	QCModelORCA	Class
QCChargeModelOptions	Module	QCModelORCA	Module
QCMMInteractionState	Class	QCModelORCAState	Class
QCMMInteractionState	Module	QCModelORCA_Pickle	Function
QCMMLinkAtomCouplingOptions	Module	QCOnePDM	Class
QCModel	Class	QCOnePDM	Module
QCModel	Module	QCOnePDM_Pickle	Function
QCModelDFT	Class	QCParameters	Class
QCModelDFT	Module	QCParameters	Module
QCModelDFTState	Class	QCParameters_Define	Function
QCModelDFTState	Module	QCParameters_Pickle	Function
QCModelDFT_Pickle	Function	QuasiHarmonic_SystemGeometry	Function
QCModelMNDO	Class	QuasiNewtonMinimizer	Class
QCModelMNDO	Module	QuasiNewtonMinimizer	Module

R

RadialDistributionFunction	Function	RegularGrid	Module
ReactionPaths	Module	RegularGrid_FromDimensionData	Function
Real1DArray	Class	RegularGrid_Pickle	Function
Real1DArray	Module	RegularHistogram	Class
Real1DArray_Pickle	Function	RegularHistogramBinMidPointIterator	Class
Real2DArray	Class	RegularHistogramDataIndexIterator	Function
Real2DArray	Module	RegularHistogramDimension	Class
Real2DArray_Pickle	Function	RegularHistogramIndexIterator	Function
RealNDArray	Class	RemoveRotationTranslation	Function
RealNDArray	Module	RenumberEntityComponents	Function
RealNDArray_Pickle	Function	RESPIterator	Function
Reflection	Class	RingFinder	Module
RegularCubicGrid3	Class	RM1	MNDO Hamiltonian
RegularGrid	Class

S

SAWOptimize_SystemGeometry	Function	SoftConstraintTether	Class
SDFFile_ToSystems	Function	SolvateSystemBySuperposition	Function
Selection	Class	SolventCubicBoxDimensions	Function
Selection	Module	SolventMoleculeNumber	Function
SelectionByDistance	Function	SolventSolvation	Module
SelectionContainer	Class	SPEBuildCoordinates3	Function
SelectionContainer	Module	SPEMinimizer	Class
SelectionContainer_Pickle	Function	SPEMinimizer	Module
SelectionUtilities	Module	Statistics	Class
Selection_Pickle	Function	Statistics	Module
Selection_SortComparison	Function	StatisticsAccumulator	Class
SelfDiffusionFunction	Function	SteepestDescentMinimizer	Class
SelfPairList	Class	SteepestDescentMinimizer	Module
SelfPairListIterator	Class	SteepestDescentMinimize_SystemGeometry	Function
SelfPairList_FromCoordinates3	Function	SteepestDescentPathFinder	Class
SelfPairList_FromIntegerPairs	Function	SteepestDescentPathFinder	Module
SelfPairList_Pickle	Function	SteepestDescentPath_SystemGeometry	Function
Sequence	Class	STO-3G	Gaussian Basis
Sequence	Module	String	Module
SequenceAtom	Class	StringArray	Class
SequenceComponent	Class	String_To_Boolean	Function
SequenceEntity	Class	StructureAnalysis	Module
SequenceUtilities	Module	styles	CSS Style Files
SingleBond	Class	Summary	Class
SingleObjectContainer	Class	SymmetricMatrix	Class
Singleton	Class	SymmetricMatrix	Module
Singleton	Module	SymmetricMatrix_Pickle	Function
SMILESAtom	Class	Symmetry	Class
SMILESBond	Class	Symmetry	Module
SMILESConnectivity	Class	SymmetryElement	Class
SMILESConnectivityError	Class	SymmetryOperation	Module
SMILESReader	Class	SymmetryParameterGradients	Class
SMILESReader	Module	SymmetryParameterGradients	Module
SMILESReaderError	Class	SymmetryParameters	Class
SMILESUtilities	Module	SymmetryParameters	Module
SMILESWriter	Class	SymmetryParameters_Pickle	Function
SMILESWriter	Module	System	Class
SMILES_FromSystem	Function	System	Module
SMILES_ToSystem	Function	SystemDensity	Function
SoftConstraint	Class	SystemDistanceGeometryObjectiveFunction	Class
SoftConstraint	Module	SystemDistanceGeometryObjectiveFunction	Module
SoftConstraintAngleDotProduct	Class	SystemExtents	Function
SoftConstraintContainer	Class	SystemGeometryObjectiveFunction	Class
SoftConstraintContainer	Module	SystemGeometryObjectiveFunction	Module
SoftConstraintDihedral	Class	SystemGeometryTrajectory	Class
SoftConstraintDistance	Class	SystemGeometryTrajectory	Module
SoftConstraintEnergyModel	Class	SystemSoftConstraintTrajectory	Function
SoftConstraintEnergyModelHarmonic	Class	SystemSoftConstraintTrajectory	Module
SoftConstraintEnergyModelHarmonicRange	Class	SystemSoftConstraintTrajectoryReader	Class
SoftConstraintMultipleDistance	Class	SystemSoftConstraintTrajectoryWriter	Class
SoftConstraintMultipleTether	Class

T

Table	Class
TestCase	Class
TestDataResult	Class
TestDataSet	Class
TestDatum	Class
TestError	Class
Testing	Module
TestReal	Class
TestResult	Class
TextFile	Class
TextFile	Module
TextFileReader	Class
TextFileReaderError	Class
TextFileWriter	Class
TextFileWriterError	Class
TextHeading	Class
TextLogFileWriter	Class
TextParagraph	Class
TextSummary	Class
TextTable	Class
ThermodynamicsRRHO_SystemGeometry	Function
Time	Module
TrajectoryAnalysis	Module
Transformation3	Class
Transformation3	Module
Transformation3Container	Class
Transformation3Container	Module
Transformation3Container_Identity	Function
Transformation3Container_Pickle	Function
Transformation3_FromSymmetryOperationString	Function
Transformation3_Pickle	Function
TripleBond	Class
Turbomole QZVP	Gaussian Basis
Turbomole SV(P)	Gaussian Basis
Turbomole TZVP	Gaussian Basis

U

UndefinedBond	Class
Units	Module
UNITS_ANGLE_DEGREES_TO_RADIANS	Variable
UNITS_ANGLE_RADIANS_TO_DEGREES	Variable
UNITS_DIPOLE_ATOMIC_UNITS_TO_DEBYES	Variable
UNITS_ENERGY_E2ANGSTROMS_TO_KILOJOULES_PER_MOLE	Variable
UNITS_ENERGY_ELECTRON_VOLTS_TO_KILOJOULES_PER_MOLE	Variable
UNITS_ENERGY_HARTREES_TO_ELECTRON_VOLTS	Variable
UNITS_ENERGY_HARTREES_TO_KILOJOULES_PER_MOLE	Variable
UNITS_ENERGY_KILOCALORIES_PER_MOLE_TO_KILOJOULES_PER_MOLE	Variable
UNITS_LENGTH_ANGSTROMS_TO_BOHRS	Variable
UNITS_LENGTH_BOHRS_TO_ANGSTROMS	Variable
UNITS_MASS_AMU_TO_KG	Variable
UNITS_PRESSURE_ATMOSPHERES_TO_KILOJOULES_PER_MOLE	Variable
UNITS_PRESSURE_ATMOSPHERES_TO_PASCALS	Variable
Unpickle	Function

V

VALENCIESAROMATIC	Variable	Vector3_Pickle	Function
VALENCIESORGANIC	Variable	Vector_Pickle	Function
Vector	Class	VelocityVerletDynamics_SystemGeometry	Function
Vector	Module	VelocityVerletIntegrator	Class
Vector3	Class	VelocityVerletIntegrator	Module
Vector3	Module	Verbatim	Class

W

Weigend Coulomb Fitting

Gaussian Basis

WHAMEquationSolver

Function

X

XHTMLHeading	Class	XMLUnpickle	Function
XHTMLLogFileWriter	Class	XMLUnpickler	Class
XHTMLObject	Class	XMLUnpickler	Module
XHTMLParagraph	Class	XYZFileReader	Class
XHTMLSummary	Class	XYZFileReader	Module
XHTMLTable	Class	XYZFiles_FromSystemGeometryTrajectory	Function
XHTMLVerbatim	Class	XYZFiles_ToSystemGeometryTrajectory	Function
XMLPickle	Function	XYZFileWriter	Class
XMLPickler	Class	XYZFileWriter	Module
XMLPickler	Module	XYZFile_FromSystem	Function
XMLPicklerDefinitions	Module	XYZFile_ToCoordinates3	Function
XMLPicklerError	Class	XYZFile_ToSystem	Function

pDynamo Library Reference

Index

3

6

A

B

C

D

E

F

G

H

I

J

L

M

N

O

P

Q

R

S

T

U

V

W

X